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Best Quickbooks Apps for Shopify in 2025

You’re a busy entrepreneur running your ecommerce business, and researching the best QuickBooks Online apps you can use to optimize your Shopify store is time-consuming. So, we took the liberty of doing this legwork for you. 

These apps can help you do seamless accounting through the Shopify admin dashboard if you're using QuickBooks to manage bookkeeping for your ecommerce business.

By looking at the app store rating, the number of reviews, the app’s top features, and other subjective parameters, we have curated the best QuickBooks apps. We hope this will help you in your research to pick the best app for your store.

P.S.: If you're also looking to deliver stellar customer service to your customers while managing your accounts, check out DelightChat, an omnichannel customer support software for SME ecommerce brands.

Looking for the best QuickBooks app to manage the accounting for your Shopify store? Here are the 12 best QuickBooks apps you should use, free or paid, based on hundreds of recommendations.
Quickbooks Sync by Bold

Quickbooks Sync by Bold

by
BOLD
No reviews
3.6
(
209
)
Free
Key features of the app:
Programmed Daily Sync: Automatically imports your requests, stock and your items from Shopify to Quickbooks everyday!.

Full Order Details: Each request you send out from Shopify into QuickBooks will consequently incorporate all details, transportation and taxes.

Beautify Reports: Sync your requests to Quickbooks and exploit their ground-breaking and excellent reports.
QuickBooks Online by OneSaas

QuickBooks Online by OneSaas

by
OneSaas
No reviews
4.7
(
235
)
Starts at $19/month
Key features of the app:
Link the apps: Onesaas focuses on promoting workflows beginning with a purchase - estimate, request, invoice or receipt.

Save time and money: Avoid wasting time inputting data between applications. Get Shopify and quickbooks Online data sharing automatically through onesaas.

Get back to life: You'll be able to Get back to business With your applications running happily together.
QuickBooks Bridge

QuickBooks Bridge

by
Parex Technologies
No reviews
4.8
(
104
)
Starts at $10/month
Key features of the app:
Order Sync to quickbooks: All Order details such as client, Line products, fees, delivery etc. Will be synced When an Order is synced from Shopify to quickbooks.

Automated regular Process: If You want your data to be synced to quickbooks, You can pick the time of the day or choose to do so manually at your own convenience.

Simple Integration: With only a few taps, you're ready to sync your results. Activate our program, just sit back and unwind.
ChannelApe Fulfillment

ChannelApe Fulfillment

by
ChannelApe
No reviews
4.9
(
32
)
Starts at $350/month
Key features of the app:
One organization, stage, accomplice: The 3PL organization for the present top brands. Stock by area/status across distribution centers. Utilize new homegrown + worldwide warehouses.

International: Our organization of satisfaction suppliers stretches out all through the US, UK, Europe and Canada. Join one or a huge number for time and cost savings.

Seamless Integration: Connect to Shopify in not more than minutes with straightforward introduce. Design your satisfaction business administers your direction and offer stunning encounters.
QuickBooks Desktop Sync

QuickBooks Desktop Sync

by
Webgility, Inc.
No reviews
4.8
(
406
)
Starts at $99/month
Key features of the app:
Operations for Automate ecommerce: Sync quickbooks, Shopify, Amazon, ebay and more for a full image of your market success!.

Accurate Accounting Automation: By linking Shopify to quickbooks, you Save time on data entry, increase efficiency and ensure reliable financials are preserved.

Completion of order: Improve consumer satisfactionâĢĶprocess orders quicker, avoid stock-outs, and quickly access historical information.
Connex for QuickBooks Online

Connex for QuickBooks Online

by
Sync with Connex
No reviews
4.5
(
20
)
Starts at $49/month
Key features of the app:
Computerize Accounting: Easily sync and post deals, client data, items, discounts/fractional discounts and more into QuickBooks Online. No more information entry!.

Inventory Updates: Sync stock updates from QuickBooks Online to your Shopify store in short order - no more oversells!.

Easy Set-up: With no product needed to download or modules to install,Connex sets up effectively in only a couple minutes.
Connex for QuickBooks Desktop

Connex for QuickBooks Desktop

by
Sync with Connex
No reviews
4.4
(
19
)
Starts at $69/month
Key features of the app:
Programmed Accounting: Easily sync and post deals, client data, items, discounts/incomplete discounts and more to QuickBooks work area. No more information entry!.

Inventory Management: Sync stock updates from QuickBooks work area to your Shopify store in second - no more oversells!.

Easy Set-up: With no product to download and no modules to introduce, Connex set-ups up effectively in only a couple minutes.
QuickBooks or Xero Sync by A2X

QuickBooks or Xero Sync by A2X

by
A2X
No reviews
4.9
(
265
)
Starts at $19/month
Key features of the app:

Automated ecommerce accounting without the fuss: Turn hours of manual calculations into just a few clicks. For each bank deposit sent from your ecommerce platform(s), A2Xgenerates a journal summary detailing all the fees, taxes, returns, and other income and expense lines included - automatically.

Statements are split by month: A2X keeps things simple by separating deposits that span months and creating a summary for each. Plus, by organizing books via the accrual accounting method, you’ll have the clearest picture of the health of your business.

Account and tax mapping for quick and easy reconciliation: Set A2X to use your existing. Chart of Accounts, or create new ones, so that records are consistent and easily accessible.A2X scales with you: With a range of plans to suit your business size, and options to integrate multiple channels, A2X is an app for life.

QuickBooks Daily Summary Sync

QuickBooks Daily Summary Sync

by
bookkeep.com Inc.
No reviews
4.9
(
8
)
Starts at $9.99/month
Key features of the app:
Sum up all requests every day: Post ONE sensible POST for every one of your deals EACH DAY, so your entrances are the place it ought to be each month.

1-click QuickBooks joining: Connect to QuickBooks Online and map your outline of records with only a single tick. Our help group and bookkeepers are here for you.

Reconcile stores in minutes: Get spotless information each time paying little mind to discounts, trades, or expenses! Never squander one more moment on manual compromises or adjustments.
QuickBooks or Xero Sync

QuickBooks or Xero Sync

by
Webgility
No reviews
4.8
(
514
)
Starts at $15/month
Key features of the app:

Kick Busywork To The Curb: Easily sync Shopify orders as you need: daily summary or each transaction so your books (QuickBooks Desktop or Netsuite) stay accurate.

No Sweat Reconciliation: Eliminate end of month headaches as your bank deposits neatly match your accounts and sales taxes are accurate for filing.

Control Cash & Profitability: Quickly gain insight into cash flow, revenue, expenses and performance, so you spend less time doing books and more time driving growth.

QuickBooks Commerce

QuickBooks Commerce

by
Intuit
No reviews
3.7
(
166
)
Starts at $39/month
Key features of the app:
Stock administration: Keep stock levels precise as you obtain stock and satisfy orders from different distribution center locations.

Multichannel selling: Manage orders from eCommerce, commercial center and discount diverts in one focal place.

B2B eCommerce stage: Launch your private discount business and associate with your Shopify store.
QuickBooks|Xero sync ‑ Synder

QuickBooks|Xero sync ‑ Synder

by
CloudBusiness Inc
No reviews
4.9
(
156
)
Starts at $13.88/month
Key features of the app:

Live sync of your Shopify store sales with all details like processor fees, taxes, and order information accounted for to Xero and QuickBooks. Enablement takes 30 minutes from start to finish. 

Sales amounts, fees, tax, items, shipping and discounts - everything will be reflected in your books to provide you with correct reports.

Have a Shopify store and another sales platform like Etsy or eBay? You can link all channels in one ecosystem. 25+ integrations are available!

We know that choosing the right app can be daunting. These are the best apps we found during our research, and we honestly hope one of them is the right one for your store.

If you think there's an excellent app worthy of this list, drop an email to our team at marketing@delight(dot)chat. Until then, happy growing!

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