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Best Shopify Quickbooks Integration Apps in 2025

You’re a busy entrepreneur running your ecommerce business,  and researching the best Quickbooks integration apps you can use to optimize your Shopify store is time-consuming. So, we took the liberty of doing this legwork for you. 

These apps can help you help you integrate with Quickbooks and manage your store's accounting in a better fashion.

By looking at the app store rating, the number of reviews, the app’s top features, and other subjective parameters, we have curated the best Quickbooks integration apps. We hope this will help you in your research to pick the best app for your store.

Looking for the best Shopify apps to grow your store? Here are 8 best quickbooks integration apps you should use, free or paid, based on hundreds of recommendations.
Stock Sync ‑ Qty update by SKU

Stock Sync ‑ Qty update by SKU

by
Stock Sync
No reviews
4.8
(
674
)
Free
Key features of the app:
Csv, xml, xls, xlsx, edi,. Txt: Supports most product feed formats such as xml, Rest api, soap, javascript, json and provider distribution links including vendor authentication.

Ftp, Email, Rest api, Dropbox: Connect with several feed platforms like sftp, collect text, web search, quickbooks, Google Spreadsheet, Dropbox, onedrive and more.

Automate inventory scheduling: Set Stock Sync to automatically change your inventory feed accordingly, whether it is hourly or monthly (after processing the file).
QuickBooks or Xero Sync by A2X

QuickBooks or Xero Sync by A2X

by
A2X
No reviews
4.9
(
265
)
Starts at $19/month
Key features of the app:

Automated ecommerce accounting without the fuss: Turn hours of manual calculations into just a few clicks. For each bank deposit sent from your ecommerce platform(s), A2Xgenerates a journal summary detailing all the fees, taxes, returns, and other income and expense lines included - automatically.

Statements are split by month: A2X keeps things simple by separating deposits that span months and creating a summary for each. Plus, by organizing books via the accrual accounting method, you’ll have the clearest picture of the health of your business.

Account and tax mapping for quick and easy reconciliation: Set A2X to use your existing. Chart of Accounts, or create new ones, so that records are consistent and easily accessible.A2X scales with you: With a range of plans to suit your business size, and options to integrate multiple channels, A2X is an app for life.

QuickBooks Commerce

QuickBooks Commerce

by
Intuit
No reviews
3.7
(
166
)
Starts at $39/month
Key features of the app:
Stock administration: Keep stock levels precise as you obtain stock and satisfy orders from different distribution center locations.

Multichannel selling: Manage orders from eCommerce, commercial center and discount diverts in one focal place.

B2B eCommerce stage: Launch your private discount business and associate with your Shopify store.
ChannelApe Fulfillment

ChannelApe Fulfillment

by
ChannelApe
No reviews
4.9
(
32
)
Starts at $350/month
Key features of the app:
One organization, stage, accomplice: The 3PL organization for the present top brands. Stock by area/status across distribution centers. Utilize new homegrown + worldwide warehouses.

International: Our organization of satisfaction suppliers stretches out all through the US, UK, Europe and Canada. Join one or a huge number for time and cost savings.

Seamless Integration: Connect to Shopify in not more than minutes with straightforward introduce. Design your satisfaction business administers your direction and offer stunning encounters.
QuickBooks Online or Xero Sync

QuickBooks Online or Xero Sync

by
Webgility, Inc.
No reviews
4.8
(
109
)
Starts at $15/month
Key features of the app:
Push Busywork To The Curb: Quickly sync order if you need.

No stress Reconciliation: Remove headaches at the end of the month when your bank balances align your accounts perfectly, and income taxes are right for reporting.

Cash & profitability control: Gain insight into Cash flow, sales, expenditures and results easily, so you spend less time doing books and more time driving growth.
Connex for QuickBooks Online

Connex for QuickBooks Online

by
Sync with Connex
No reviews
4.5
(
20
)
Starts at $49/month
Key features of the app:
Computerize Accounting: Easily sync and post deals, client data, items, discounts/fractional discounts and more into QuickBooks Online. No more information entry!.

Inventory Updates: Sync stock updates from QuickBooks Online to your Shopify store in short order - no more oversells!.

Easy Set-up: With no product needed to download or modules to install,Connex sets up effectively in only a couple minutes.
Connex for QuickBooks Desktop

Connex for QuickBooks Desktop

by
Sync with Connex
No reviews
4.4
(
19
)
Starts at $69/month
Key features of the app:
Programmed Accounting: Easily sync and post deals, client data, items, discounts/incomplete discounts and more to QuickBooks work area. No more information entry!.

Inventory Management: Sync stock updates from QuickBooks work area to your Shopify store in second - no more oversells!.

Easy Set-up: With no product to download and no modules to introduce, Connex set-ups up effectively in only a couple minutes.
Flowify for QuickBooks

Flowify for QuickBooks

by
Flowify
No reviews
5
(
2
)
Starts at $9/month
Key features of the app:
QuickBooks Inventory Matching: Seamlessly incorporates Shopify items and QuickBooks Online items to guarantee appropriate chronicle of deals, stock and COGS each time.

Automated Accounting: No more manual section! Deals and COGS are recorded every day. Each payout is naturally handled - sparing you both time and money.

Quick and Easy Onboarding: Seriously! Our QuickBooks Online onboarding is currently just 14 stages. Gone are the times of bookkeeping, presently set it and overlook it.
QuickBooks Daily Summary Sync

QuickBooks Daily Summary Sync

by
bookkeep.com Inc.
No reviews
4.9
(
8
)
Starts at $9.99/month
Key features of the app:
Sum up all requests every day: Post ONE sensible POST for every one of your deals EACH DAY, so your entrances are the place it ought to be each month.

1-click QuickBooks joining: Connect to QuickBooks Online and map your outline of records with only a single tick. Our help group and bookkeepers are here for you.

Reconcile stores in minutes: Get spotless information each time paying little mind to discounts, trades, or expenses! Never squander one more moment on manual compromises or adjustments.
QuickBooks|Xero sync ‑ Synder

QuickBooks|Xero sync ‑ Synder

by
CloudBusiness Inc
No reviews
4.9
(
156
)
Starts at $13.88/month
Key features of the app:

Live sync of your Shopify store sales with all details like processor fees, taxes, and order information accounted for to Xero and QuickBooks. Enablement takes 30 minutes from start to finish. 

Sales amounts, fees, tax, items, shipping and discounts - everything will be reflected in your books to provide you with correct reports.

Have a Shopify store and another sales platform like Etsy or eBay? You can link all channels in one ecosystem. 25+ integrations are available!

We know that choosing the right app can be daunting. These are the best apps we found during our research, and we honestly hope one of them is the right one for your store.

If you think there's an excellent app worthy of this list, drop an email to our team at marketing@delight(dot)chat. Until then, happy growing!

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